miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|167430483|gb|FD934475.1|FD934475 TTTTTTTTTTTTTTTTTTGCACTGAACCATTAAAAACATTAACAAACAGTTTTCTGAAGGACAGAATATGCTTTGATCAG
CTAATGGCACACACAACAACAAATGATGAAACGCCAAACGCAAATTATTAAACCAAGTACTTAATTTGTATAGCATCATG
AGCAATCAGTCTTGGAAACTCAGTTGTTGGTTTCTCAATAGATTGACTGCTCGTGATGTTATATCATTTTCTCTAAGGTT
GGAATTCCACGTGGTAGAGTTTCTTTGTCTCAGTGAAAACTGGCGGAGCCGAGTGTCGGAGCCCAATAGTCGGCGCCGTT
GTCGCTGCCAACTTGGAGTGTGTAGGAGATTGGAACAAGACATAAACCCCGACTTCTTAAATCTTTCTTAGGTTCTTCAT
TTGCATTCTGAACCTCTGTAGATGATCTTCTCTTCACGCATTGATCATTCACAAGCTGACCAGGGTCCTCAGGAAATAAG
CAACTTCTGTCTCCTCGCAAATGTTGGTTACTCAGATTCCCCGAGGCAGTTGTACCAAAATATGGATGACTCAGAGCCTC
AATTTGACTGTGAAGGAATCTAATGTATCCAATAGCTTCCGACAGGACAGAAGCTGTGTCAGTCTTGCCAAAAGGAGATA
CTAGCTGATGAAGCACTGCGATCCGGCCTCCTAATTTCTCCTTTCTCACCTTAAGGGTGGACTGTGA




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  259 bits (661), Expect = 2e-68
 Identities = 131/150 (87%), Positives = 138/150 (92%), Gaps = 5/150 (3%)
 Frame = -1

Query: 707 SQSTLKVRKEKLGGRIAVLHQLVSPFGKTDTASVLSEAIGYIRFLHSQIEALSHPYFGTT 528
           SQSTLKVRKEKLGGRIA LHQLVSPFGKTDTASVLSEAIGYIRFL SQIEALSHPYFGTT
Sbjct: 258 SQSTLKVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTT 317

Query: 527 ASGNLSN-QHLRGDRSCLFPEDPGQLVNDQCVKRR----SSTEVQNANEEPKKDLRSRGL 363
           ASGN+ + QHL+GDRSC+FPEDPGQLVNDQC+KRR    SST+ QNA+EEPKKDLRSRGL
Sbjct: 318 ASGNMRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGL 377

Query: 362 CLVPISYTLQVGSDNGADYWAPTLGSASFH 273
           CLVPIS TLQVGSDNGADYWAP LGSA FH
Sbjct: 378 CLVPISCTLQVGSDNGADYWAPALGSAGFH 407